PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dusal.0399s00006.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Dunaliellaceae; Dunaliella
Family NF-YC
Protein Properties Length: 839aa    MW: 85853.5 Da    PI: 5.8364
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dusal.0399s00006.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC40.36.9e-13461232197
                 NF-YC  21 lPl.arikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 
                            Pl arikk+++adedv +is  +P+ll++a elf+ +l   + + a++ + +t+  s ++  v+  +  dfl ++v 
  Dusal.0399s00006.2.p  46 CPLaARIKKLMQADEDVGKISQATPTLLARAMELFLKKLVEGTCNVAQSRQAKTVSTSHLKHFVSMDKSTDFLKEKVA 123
                           57636********************************************************************99986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008084.5E-1350107IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471131.1E-1550126IPR009072Histone-fold
Gene3DG3DSA:1.10.20.104.8E-2150109IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 839 aa     Download sequence    Send to blast
MKSEDKVKAE EKVKAEDDAA LEREEEEARE QEGQLRPSLR QARKPCPLAA RIKKLMQADE  60
DVGKISQATP TLLARAMELF LKKLVEGTCN VAQSRQAKTV STSHLKHFVS MDKSTDFLKE  120
KVASAPDLGD APEAKPKRKR SSGLDKAGGA EGGEGPQEGG GEEGVGQPRK RGPRRSAAQK  180
AAEAEAEAEE AEALEGVMAS PTAAGSGGRG RKRGGCAEGG GRGGRKRKGA GAGAGEEQQQ  240
QHHQQLQQQQ QPMQGAALMS YERILAQVRE MAGPMGLQED QVHTMAAQMH AMQSNPELQQ  300
HLMQPSVDPQ LAALQPTPQL GQPQPQPQQL PFLPPLQLQQ QQQQQAQPQP QPQMPFLPQL  360
QLQQQQPHPQ LPFLLPQQLQ QQQHLQPQLP FLPPLQLQQQ QQPQLPFLPP LQLQQQQQPQ  420
LPFLPPLQLQ QQQAQQQQQQ SLDLAGHAQG GNDPAAAAAA AAAAAAVTGF PGGGGGNAAA  480
TAAAAVAGFQ GGAGDASAGG VPHIKAEGQG EQGARSIEGG GPSQEGGAGA HIKQEQGTTG  540
VLGMGGMSVP GDASGGGGMP SIVGLPPLSG FGGGGGDSGG LGGGGDGNMD DLFAAAAAAA  600
AAEISGNMAG QPQPQASVPP PFHPQPLLQQ QQQQQQPGAP SEPFSAPTIN MPSSGVGISN  660
SGSGQSRPGD SMGGAGSAFS KPGPSLSSAL RGSGHPLSLR PTHPMTLKKG SKGPGAKDKA  720
GQGGADGAQK QSQPQSLPPQ TAVTQPHNPD AASTIPPPES AINKDSFAPP EGVPTLAPAS  780
QPSSVRGEEE ASQPAAGGAP VSAEPLQAAP LGGGVPCVPV HLAHLGVGGA VEDDDYDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A3e-18501121577Transcription Regulator NC2 alpha chain
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1210227RKRGGCAEGGGRGGRKRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.11e-21nuclear factor Y, subunit C11